Conidiation (asexual sporulation) is a key developmental process in filamentous fungi. We examined the gene regulatory roles of the Aspergillus fumigatus developmental transcription factors StuAp and BrlAp during conidiation. Conidiation was completely abrogated in an A. fumigatus ⌬brlA mutant and was severely impaired in a ⌬stuA mutant. We determined the full genome conidiation transcriptomes of wild-type and ⌬brlA and ⌬stuA mutant A. fumigatus and found that BrlAp and StuAp governed overlapping but distinct transcriptional programs. Six secondary metabolite biosynthetic clusters were found to be regulated by StuAp, while only one cluster exhibited BrlAp-dependent expression. The ⌬brlA mutant, but not the ⌬stuA mutant, had impaired downregulation of genes encoding ribosomal proteins under nitrogen-limiting, but not carbon-limiting, conditions. Interestingly, inhibition of the target of rapamycin (TOR) pathway also caused downregulation of ribosomal protein genes in both the wild-type strain and the ⌬brlA mutant. Downregulation of these genes by TOR inhibition was associated with conidiation in the wild-type strain but not in the ⌬brlA mutant. Therefore, BrlAp-mediated repression of ribosomal protein gene expression is not downstream of the TOR pathway. Furthermore, inhibition of ribosomal protein gene expression is not sufficient to induce conidiation in the absence of BrlAp.Aspergillus species are filamentous fungi with a complex life cycle that is characterized by distinct developmental stages. Development is a highly regulated process that has been studied extensively in the model organism Aspergillus nidulans (3), a minimally pathogenic Aspergillus species. Little is known, however, about the role of these stages of development in the more virulent species Aspergillus fumigatus, which can cause invasive pneumonia and disseminated disease in immunocompromised patients. The asexual life cycle of Aspergillus spp. can be divided into two broad stages. First, conidia (asexual spores) undergo germination to produce filamentous hyphae that grow by elongation. As these hyphae mature, they gain the ability to respond to a variety of stimuli such as nutrient starvation by forming multicellular structures (conidiophores) that produce single cellular conidia and thus begin the cycle again. This stage is termed conidiation, and hyphae that have the capacity to form conidiophores are called developmentally competent.The process of conidiation is under complex genetic control. In A. nidulans, Timberlake demonstrated that there are in excess of 1,000 distinct mRNAs that are found at increased concentrations during conidiation (33). Despite this staggering number, which was derived from subtractive hybridization experiments, brlA is one of very few genes that have been shown through genetic analysis to be absolutely required for conidiation (1, 7). Further, overexpression of brlA can induce conidiation at times and under conditions in which conidiation does not normally occur (1, 2).In both A. fumigatus and A. nidulans, the...