“…Enhancer-mediated DNA "loops" may be equivalent to topologically-associated domains (TADs) identified by chromatin conformation capture analysis (Rao et al, 2014;Symmons et al, 2014;Lupianez et al, 2015;Hansen et al, 2018;Souaid et al, 2018) and play a role in the formation and organization of such domains (Furlong and Levine, 2018;Souaid et al, 2018;Lim and Levine, 2021). TAD boundaries are maintained by the interplay of the Cohesin and Mediator complexes and the zinc finger "transcription factor" CTCF (Kagey et al, 2010;Lee and Iyer, 2012;Wutz et al, 2017;Hansen et al, 2018;Popay and Dixon, 2022), all of which bind RNA or RNA/DNA hybrids (Yao et al, 2010;Saldana-Meyer et al, 2014;Kung et al, 2015;Hansen et al, 2019;Pan et al, 2020;Kuru-Schors et al, 2021). Enhancers also play a role in the etiology of complex diseases, developmental disorders and cancer (Hnisz et al, 2013;Smith and Shilatifard, 2014;Herz, 2016;Chen and Liang, 2020;Jindal and Farley, 2021), and disruptions of chromatin topological domains lead to rewiring of gene-enhancer interactions with pathogenic consequences (Smith and Shilatifard, 2014;Lupianez et al, 2015;Krijger and de Laat, 2016;Souaid et al, 2018;Nott et al, 2019;Beagan et al, 2020;Nasser et al, 2021).…”