[NiFe] hydrogenase catalyzes the reversible oxidation of molecular hydrogen. The large subunit of the enzyme carries a NiFe(CN) 2 (CO) cluster at the active site. The biosynthesis of the NiFe cluster needs maturation proteins, HypA, HypB, HypC, HypD, HypE, and HypF. After incoorporation of the Fe(CN) 2 CO group, HypB inserts the Ni atom together with HypA. Previously charactrized HypB protein belongs to the G3E family GTPase and GTP hydrolysis is required for the Ni insertion process and maturation. A gene encoding the G3E family HypB is not found in genome of some archaea. On the other hand, a gene showing high sequence similarity to the Mrp/MinD family ATPase is conserved adjacent to the hypA gene on their genome, assuming that this gene encodes a functional homologue of HypB. Here, we identify TK2007 gene product from hyperthermophilic archaeon Thermococcus kodakarensis KOD1 as HypB and determine its crystal structure. A severe growth defect of the ÄTK2007 strain under hydrogenase-required condition was observed and restored by addition of Ni ions, providing convincing evidence that the TK2007 gene product is a novel Mrp/MinD family HypB protein in T. kodakarensis (Tk-mmHypB). The structure of Tk-mmHypB was solved as homodimer related by a non-crystallographic 2-fold axis. Each monomer consists of a central seven-stranded parallel b-sheet surrounded by a-helices. Intriguingly, ADP molecules from E. coli expression system are tightly bound to the protein although we did not attempted to co-crystallize the purified sample with an ATP, suggesting that Tk-mmHypB shows high affinity with an ADP molecule. Significant structural differences between monomers indicate that the C-terminal loop-helix-loop region is related to the affinity for the ADP. Furthermore, the structure around the dimer interface reveals that the dimer formation is required for ATP hydrolysis.Comparison of the nucleotide-binding site with that of the Mrp/MinD family nitrogenase iron NifH protein suggests structural change during the hydrolysis. These structural insights imply the Ni insertion mechanism depending on nucleotide-exchange factor. Our studies on Tk-mmHypB shed new light on structural and functional diversity of HypB proteins in the Ni insertion process in the [NiFe] hydrogenase maturation.