Scientific progress in understanding, preventing, treating, and managing viral infections and associated diseases exemplifies the extent to which research on small DNA tumor viruses has impacted human health. Various diagnostic tools for detecting virus infections and effective prophylactic vaccines against human papillomavirus (HPV) and hepatitis B virus (HBV) now promise to reduce the disease burden of these viruses in the coming decades. At the same time, these small DNA viruses, including the polyomavirus SV40 and adenoviruses, have been indispensable tools for studying molecular mechanisms of carcinogenesis and basic cellular functions. Fundamental processes of cellular biology, such as transcriptional regulation, splicing, and DNA damage, have been elucidated, at least in part, through the study of the replication cycles of such viruses and their interactions with the host. Nowadays, they also serve as valuable tools outside the research setting as viral vectors in numerous gene therapies and vaccines. Despite the advent of new technologies, research on small DNA viruses remains relevant to discovering novel biological mechanisms and clinical applications further to reduce disease burden. In this Special Issue, we have collected work that showcases current and ongoing work towards these goals [...]