Methyltetrahydrofolate reductase (MTHFR) is a key enzyme in folate metabolism, and its single nucleotide polymorphism (SNP) site C677T may be associated with gastrointestinal cancer. However, the relationship between MTHFR C677T polymorphism and gastrointestinal tumor markers carcinoma embryonic antigen (CEA), carbohydrate antigen 199 (CA199) and carbohydrate antigen 724 (CA724) in
Helicobacter pylori
(
H. pylori
) infection is not specified. This study aims to identify the association between MTHFR C677T polymorphism and gastrointestinal tumor markers (CEA, CA199 and CA724) in H. pylori infection. The relationship between MTHFR C677T polymorphism and gastrointestinal tumor markers in 58 patients with H. pylori infection and 94 non-infected patients was studied. We found that TT genotype was a susceptibility factor of
H. pylori
infection, which was also associated with increased CEA and CA724 levels. Moreover, there was a negative additive interaction between
MTHFR
gene C677T polymorphism and CEA levels in
H.pylori
infection. Meanwhile, there were significant differences in CEA levels between MTHFR C677T polymorphism and
H.pylori
infection. The presence of T allele led to a decrease in CEA levels when
13
C urea breath test (
13
C-UBT) was positive, while the presence of T allele led to an increase in CEA levels when
13
C-UBT was negative. Therefore, we suggest that healthy people should take MTHFR C677T polymorphism screening, combined with
13
C-UBT and gastrointestinal tumor markers detection, which can screen out the susceptible population of H. pylori, and help to detect gastrointestinal cancer in the early stage.