Genetic elements that cheat Mendelian segregation by biasing transmission in their favor gain a significant fitness benefit. Several examples of sex-ratio meiotic drive, where one sex chromosome biases its own transmission at the cost of the opposite sex chromosome, exist in animals and plants. While the distorting sex chromosome gains a significant advantage by biasing sex ratio, the autosomes, and especially the opposite sex chromosome, experience strong selection to resist this transmission bias. In most wellstudied sex-ratio meiotic drive systems, autosomal and/or Y-linked resistance has been identified. We specifically surveyed for Y-linked resistance to sex-ratio meiotic drive in Drosophila affinis by scoring the sex ratio of offspring sired by males with a driving X and one of several Y chromosomes. Two distinct types of resistance were identified: a restoration to 50/50 sex ratios and a complete reversal of sex ratio to all sons. We confirmed that fathers siring all sons lacked a Y chromosome, consistent with previously published work. Considerable variation in Y-chromosome morphology exists in D. affinis, but we showed that morphology does not appear to be associated with resistance to sex-ratio meiotic drive. We then used two X chromosomes (driving and standard) and three Y chromosomes (susceptible, resistant, and lacking) to examine fertility effects of all possible combinations. We find that both the driving X and resistant and lacking Y have significant fertility defects manifested in microscopic examination of testes and a 48-hr sperm depletion assay. Maintenance of variation in this sex-ratio meiotic drive system, including both the X-linked distorter and the Y-resistant effects, appear to be mediated by a complex interaction between fertility fitness and transmission dynamics.KEYWORDS sex-ratio meiotic drive; genetic conflict; sex chromosomes; Drosophila affinis; genetics of sex S EX-RATIO meiotic drive (SRMD) is a phenomenon that has been studied for nearly as long as Drosophila (Morgan et al. 1925). While usually associated with Drosophila, it has also been studied in several other Dipterans (medfly, housefly, stalk-eyed fly, mosquitoes), lepidopterans, lemmings, mice, and two plant species (Jaenike 2001). It occurs when one sex chromosome, usually the X, is able to disable sperm carrying the opposite sex chromosome therefore skewing the ratio of sex chromosomes in gametes and thus the offspring sex ratio. Traditionally an evolutionary curiosity, the role that SRMD might play in several evolutionary and ecological processes suggests that, in some species, it may be a considerable force driving phenotypic, behavioral, and molecular evolution.SRMD has been implicated in processes as diverse as speciation (Frank 1991; Hurst and Pomiankowsi 1991;Tao et al. 2001;Phadnis and Orr 2009;McDermott and Noor 2010), changes in patterns of linkage disequilibrium (Dyer et al. 2007), mating system evolution (Price et al. 2008;Pinzone and Dyer 2013), extinction (Hamilton 1967), and interspecific compet...