“…In fact, most genes associated with motile cilia function, e.g., the master regulator of motile ciliogenesis foxj1a and some of its target genes, 30 , 73 were upregulated ( Figure 4C2 , red highlight), suggesting a potential genetic compensation mechanism as observed in the ccdc103 (also known as smh ) and rpgrip1l mutants. 51 , 74 Among genes associated with the GO terms “neurological system process” and “neuron part”, we identified that genes encoding for the grow factor brain-derived neurotrophic factor ( bdnf ), 75 various synaptic proteins ( synaptotagmin , synaptic vesicle glycoprotein 2b , synaptophysin b ) and enzymes involved in serotonin and catecholamine production ( tyrosin and tryptophan hydroxylase ) were downregulated ( Figure 4C3 , red highlights). Finally, genes involved in common cilia-related signaling pathways especially the sonic hedgehog pathway were differentially regulated suggesting a dampened sonic hedgehog pathway 15 , 17 ( Figure 4C4 ).…”