R1162 is efficiently comobilized during conjugative transfer of the self-transmissible plasmid R751. Bacteriophage M13 derivatives that contain two directly repeated copies of oriT, the site on R1162 DNA required in cis for mobilization, were constructed. Phage DNA molecules underwent recombination during infection of Escherichia coli, with the product retaining a single functional copy of oriT. Recombination was strand specific and depended on R1162 gene products involved in mobilization, but did not require the self-transmissible plasmid vector. Two genes were identified, one essential for recombination and the other affecting the frequency of recombination. Recombination of bacteriophage DNA could form the basis of a simple model for some of the events occurring during conjugation without the complexity of a true mating system. R1162 is a broad-host-range plasmid (essentially identical to RSF1010) that is efficiently cotransferred during conjugation by the self-transmissible plasmids of the IncP1 group (14). Transfer of R1162 requires a 38-base-pair (bp) site, oriT, on the plasmid as well as the products of several R1162 genes (2, 3). If two directly repeated copies of oriT are present on the plasmid, then after conjugation a large proportion of the plasmid molecules in recipient cells contain a single copy of oriT and have lost the DNA located between the two copies. The deletion is transfer dependent and presumably reflects nicks or cleavages at each oriT, transfer of one or both linear strands of the resulting molecule, and the rejoining of ends derived from each of the two oriT copies on the original plasmid.I show here that when two copies of oriT are cloned into derivatives of bacteriophage M13, oriT-specific recombination can occur in infected cells in the absence of conjugation. Recombination is dependent on the products of R1162 genes involved in transfer. Bacteriophage molecules can be designed so that the frequency of recombination between two copies of oriT can be easily scored. Recombination is therefore a simple and useful assay for some conjugationrelated processes because mating-pair formation and selection for exconjugants are not required.
MATERIALS AND METHODSStrains and plasmids. The Escherichia coli K-12 strains used were JM103 [zA(lac pro) strA thi supE endA sbcB hsdR (F' traD36 proAB laclq lacZAM15)] (12), M182 (AlacIPOZY lacX24 galK galU strA) (4), and RV (lacX42 Sup-) (11), containing F' lac (F-42), from I. Molineux. Plasmids used contain segments of the naturally occurring plasmid R1162 (1; Fig. 1A). Plasmid pMS40 (14) consists of a Kmr DNA fragment from Tn9O3 linked to R1162 DNA located between 0.9 and 6.6 kbp of DNA. A portion of this plasmid was cloned into pBR322 to construct pMS63 (14). Construction of pUT206, pUT208, pUT209, and pUT257, pBR322 derivatives containing cloned fragments of R1162 DNA, has also been described (2). The segments of R1162 DNA cloned in these plasmids are shown in Fig. 1B. Plasmids pUT856, pUT857, and pUT858 contain a 12-bp oligonucleotide, 5'-CTAGCTAGCT...