Wolbachia is a globally distributed bacterial endosymbiont present in arthropods and nematodes. The advent of sensitive PCR-based approaches has greatly facilitated the identification of Wolbachia-infected individuals and analysis of population infection levels. Here, a complementary visual fluorescence-based Wolbachia screening approach is described. Through the use of the fluorescent dye Syto-11, Wolbachia can be efficiently detected in various Drosophila tissues, including ovaries. Syto-11 also stains Wolbachia in other insects. Because Wolbachia is inherited through the maternal germ line, bacteria reside in the ovaries of flies in infected populations. An advantage of this staining approach is that it informs about Wolbachia titer as well as its tissue and cellular distribution. Using this method, the infection status of insect populations in two central California locations was determined, and variants with unusually low or high Wolbachia titers were isolated. In addition, a variant with ovarioles containing both infected and uninfected egg chambers was identified. Syto-11 staining of Cardinium-and Spiroplasma-infected insects was also analyzed.Wolbachia species are obligate intracellular, bacterial endosymbionts present in over 60% of all insect species (10). Manipulation of host reproduction and efficient maternal transmission have facilitated the global spread of Wolbachia in arthropods. Under optimal laboratory conditions, Wolbachia transmission in Drosophila melanogaster (11) and Drosophila simulans (10a) is 100%, but infection rates in the field can be highly variable with location, season, and host species (10a, 11). In addition, different Wolbachia strains that have various effects on host reproduction and fecundity seem to exist in single collection sites (24). Determining the Wolbachia status quickly and reliably is important for ecological work, as well as for biochemical and genetics studies of host-pathogen interaction. It has been estimated that 30% of the strains in the Bloomington Stock Center are Wolbachia infected (4). Because Wolbachia is present in a number of somatic tissues (6), including the adult brain (1, 17), an infection may influence fly behavior and metabolism (12,14,18), thus having implications for the larger Drosophila research community.The infection status of fly stocks is commonly determined by PCR (2, 11a, 18), which involves a 3-step process to first prepare the DNA, followed by the actual PCR step and gel electrophoreses (19,25). The PCR method is efficient, especially when many samples are analyzed. However, the infection status of some species has been underestimated with conventional PCR and was revealed only after "long PCR" involving 2 polymerase enzymes (13). On the other hand, too-sensitive PCR conditions may produce false positives. Standard PCR methods do not reveal the degree of Wolbachia infection, tissue of origin, and variations in Wolbachia localization or titers in the host. To complement the PCR detection, a quick method to visualize Wolbachia in live i...