2022
DOI: 10.1080/15548627.2022.2025572
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Atg8–PE protein-based in vitro biochemical approaches to autophagy studies

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Cited by 16 publications
(7 citation statements)
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“…To achieve this purpose, we expressed plasmids encoding p62 WT or the acylation-deficient mutant p62 C289,290S in WT or p62 -KO NRK cells. We found that in both cell lines, a substantial amount of the autophagy marker phosphatidylethanolamine (PE)-modified LC3 (LC3-II) 55 was accumulated upon induction of autophagy with the mTOR inhibitor Torin 1 while degradation of p62 WT was faster than that of p62 C289,290S , which was reversed by the lysosome V-ATPase inhibitor bafilomycin A1 (Baf-A1) ( Figures 3 A, 3B, and S3 A–S3D).
Figure 3 S -acylation facilitates the degradation of p62 and ubiquitinated proteins (A) Immunoblot analysis of FLAG-p62 WT and FLAG-p62 C289,290S proteins in p62 -KO NRK cells.
…”
Section: Resultsmentioning
confidence: 99%
“…To achieve this purpose, we expressed plasmids encoding p62 WT or the acylation-deficient mutant p62 C289,290S in WT or p62 -KO NRK cells. We found that in both cell lines, a substantial amount of the autophagy marker phosphatidylethanolamine (PE)-modified LC3 (LC3-II) 55 was accumulated upon induction of autophagy with the mTOR inhibitor Torin 1 while degradation of p62 WT was faster than that of p62 C289,290S , which was reversed by the lysosome V-ATPase inhibitor bafilomycin A1 (Baf-A1) ( Figures 3 A, 3B, and S3 A–S3D).
Figure 3 S -acylation facilitates the degradation of p62 and ubiquitinated proteins (A) Immunoblot analysis of FLAG-p62 WT and FLAG-p62 C289,290S proteins in p62 -KO NRK cells.
…”
Section: Resultsmentioning
confidence: 99%
“…Since the deletion of Ubp14 led to a reduction in the Gcn5 protein level, we hypothesized that autophagy may be impaired by the deletion of Ubp14. To test this hypothesis, GFP-Atg8, a commonly used autophagy pathway marker ( 45 ), was expressed in the Δ ubp14 and PH-1, and the autophagy process was determined by measuring GFP-Atg8 proteolysis ( 46 ). The breakdown of GFP-Atg8 was determined by measuring the ratio of free GFP to intact GFP-Atg8 plus free GFP.…”
Section: Resultsmentioning
confidence: 99%
“…The Atg8/LC3 family of autophagy-related proteins is a component of the autophagosome membrane that functions as a bridge between cargo and autophagosomes (58). During autophagy activation, Atg8 family proteins bind to phosphatidyl ethanolamine (PE) through a lipidation process (59).…”
Section: Mitophagy Adaptorsmentioning
confidence: 99%