Ecotones, or transitional zones between ecosystems, are often hotspots for biodiversity and targets for conservation. Where the Great Plains meet the sagebrush (Artemisia spp.) steppe, an opportunity exists to conserve habitat for the two most imperiled avian guilds in North America, grassland and shrubsteppe birds. This ecotone creates a unique challenge with respect to the management of disturbance processes, such as fire and grazing, because grassland and sagebrush-shrubland birds respond quite dissimilarly to disturbance. To address this management challenge and maximize conservation opportunities, we examined the responses of grassland and sagebrush bird communities to disturbance at a grasslandsagebrush ecotone in northeast Wyoming, USA. Specifically, we surveyed bird communities on active black-tailed prairie dog (Cynomys ludovicianus) colonies and burned areas, as well as on paired undisturbed points in 2016 and 2017. Bird community structure varied in response to both the presence and type of disturbance. Although alpha diversity of avian species was highest on undisturbed sites and burned areas, only prairie dog colonies provided breeding habitat for the imperiled shortgrass-obligate mountain plover (Charadrius montanus), and species turnover (beta diversity) was greatest between on-colony and off-colony points. Furthermore, bird communities were shaped by both disturbance-dependent (e.g., disturbance age) and disturbance-independent (e.g., topography and soils) landscape features. Managers must balance the benefits of high species diversity in undisturbed sagebrush with habitat requirements of other imperiled species like the mountain plover. This may entail prioritizing the amount and distribution of disturbances in relation to population goals for species of conservation concern while simultaneously maintaining a mosaic of all three patch types in this landscape.