Many mineralogical phases, as well as new developed synthetic compounds, occur only in form of nano-crystalline materials. The structure characterization of these phases results often impossible with conventional X-ray techniques, as X-ray single crystal diffraction is not possible for crystals smaller than 10 µm and powder X-ray is limited to onedimensional information, resulting inadequate in presence of low symmetry structures, superstructured phases and multiphase systems. Conversely, an electron beam can be focused on a spot of few nanometres, allowing single nano-crystal analysis.Well known problems related with electron diffraction are the strong dynamical effects due multiple scattering, the reduced number of reflections achievable with conventional techniques and the amorphization produced by the electron beam damage, quite fast especially for high polymerized and hydrated phases. To overcome all these problems, a new technique for automated collection of nano electron diffraction data from non-oriented zones was developed: automated diffraction tomography (ADT, [1,2]). This technique was recently coupled with precession electron diffraction (PED, [3]), allowing the structure solution of even very complex inorganic and hybrid organic-inorganic phases.At first the technique was tested on well known and beam-stable phases, as barite (BaSO 4 , [4]) and calcite (CaCO 3 , [5]). After the establishment of a suitable experimental protocol, the structure solution of these phases was demonstrated to be routinely reproducible. Therefore the technique was applied to the structure solution of interesting mineralogical cases, as synthetic high pressure phases and micro-porous complex structures as charoite [6] and zeolites. In all the cases the reflections were collected from single nano-crystals and treated with a fully kinematic approach (I=F 2 ). Inside the experimental resolution of 0.8-1.1 Å, up to 90% of crystallographic independent reflections were collected. The structures were solved by direct methods and refined using the programs commonly available fro X-ray crystallography.Charoite is one of the most complex structure solved ex-novo and "ab-initio" by electron diffraction data. Two ordered polytypes with different cell parameters were identified inside the sample along with other partially ordered and disordered polytypes. Charoite is a micro-porous rare silicate consisting of three different tubular silicon chains and Ca/Na octahedron bands. The holes are filled with H2O and K+ and Sr2+ ions. Ninety independent atoms were found in the asymmetric unit.Zeolites are a high interesting material class, both as minerals and industrial materials. Their uses range from catalysis and toxic waste trapping to construction, agricultural and medicine. Many zeolites can be found only as nano-crystalline phases. Moreover they are usually not stable under conventional electron illumination conditions. Thus zeolites act an ideal target for a low-dose and high resolution technique as ADT. Three different zeolites were se...