Ship fairways in archipelagos pass close to small islands with complex terrain and forests. In such areas, local wind conditions deviate from regional forecasts, creating a complex and challenging environment when navigating large vessels. In this article, we carried out Computational Fluid Dynamics (CFD) simulations for wind flows over a site in the Turku Archipelago, in Finland. We assessed local wind conditions along the fairway with the intent of improving safe passage for large vessels. All simulations were carried out with and without the surrounding forests to elucidate the role of forests in shaping the local wind and turbulence conditions over the site. Our results show that in some regions of the fairway, forests can lower the wind speed to one-third of the magnitude obtained by using terrain-only models. Moreover, turbulence can locally be increased six-fold. We expect that these results will facilitate the development of new smart fairways for ensuring safe navigation through the archipelago in the future.