Cephalopods are an essential component of marine ecosystems, which are of great significance for the development of marine resources, ecological balance, and human food supply. At the same time, the preservation of cephalopod resources and the promotion of sustainable utilization also require attention. Many studies on the classification of cephalopods focus on the analysis of their beaks. In this study, we propose a feature fusion-based method for the identification of beaks, which uses the convolutional neural network (CNN) model as its basic architecture and a multi-class support vector machine (SVM) for classification. First, two local shallow features are extracted, namely the histogram of the orientation gradient (HOG) and the local binary pattern (LBP), and classified using SVM. Second, multiple CNN models were used for end-to-end learning to identify the beaks, and model performance was compared. Finally, the global deep features of beaks were extracted from the Resnet50 model, fused with the two local shallow features, and classified using SVM. The experimental results demonstrate that the feature fusion model can effectively fuse multiple features to recognize beaks and improve classification accuracy. Among them, the HOG+Resnet50 method has the highest accuracy in recognizing the upper and lower beaks, with 91.88% and 93.63%, respectively. Therefore, this new approach facilitated identification studies of cephalopod beaks.