In this work, we present methods for the personalization of a system for the continuous estimation of pain intensity from bio-physiological channels. We investigate various ways to estimate the similarity of persons and to retrieve the most informative ones using meta information, personality traits and machine learning techniques. Given this information, specialized classifiers can be created that are both, more efficient in terms of complexity and training times and also more accurate than classifiers trained on the complete data. To capture the most information in the different bio-physiological channels, we cover a broad spectrum of different feature extraction algorithms. Furthermore, we show that the system is capable of running in real-time and discuss issues that arise when dealing with incremental data processing. In extensive experiments we verify the validity of our approach.