The major problems in an underwater wireless optical communication (UWOC) link are turbulence induced fading and pointing errors. In this paper, we have investigated the bit error rate (BER) performance of spatially coupled low-density parity-check (SC-LDPC) coded horizontal UWOC link over a strong turbulent channel model with pointing errors. The performance of this link for different channel and code parameters has been studied using simulations. It has been observed that a rate 1/2 ARJA protograph based SC-LDPC code with graph lifting factor of 256 gives a coding gain of 47 dB at a BER of 10 −4 for strong turbulence channel model with pointing errors. An analytical BER expression for UWOC link under strong turbulence with pointing errors for On-Off Keying modulation technique has been derived. A multidimensional protograph based extrinsic information transfer algorithm has been developed to obtain the decoding thresholds for different channel parameters and code rates. We have also studied the SC-LDPC coded vertical UWOC link performance for some specific strong turbulence channel parameters with pointing errors and observed that as the link length increases from 20 m to 40 m, the performance gap between the hypothetical and cascaded channel models increases from 1.1 dB to 5.5 dB.INDEX TERMS Bit error rate, Low-density parity-check codes, Pointing errors, Protograph, Scintillation index, Spatially coupled LDPC codes, Underwater optical wireless communication.