Metastatic lymph nodes (
LN
s) may be the origin of systemic metastases. It will be important to develop a strategy that prevents systemic metastasis by treating these
LN
s at an early stage. False‐negative metastatic
LN
s, which are found during the early stage of metastasis development, are those that contain tumor cells but have a size and shape similar to
LN
s that do not host tumor cells. Here, we show that 5‐fluorouracil (5‐
FU
), delivered by means of a novel lymphatic drug delivery system (
LDDS
), can treat
LN
s with false‐negative metastases in a mouse model. The effects of 5‐
FU
on four cell lines were investigated using in vitro cytotoxicity and cell survival assays. The therapeutic effects of
LDDS
‐administered 5‐
FU
on false‐negative metastatic
LN
s were evaluated using bioluminescence imaging, high‐frequency ultrasound (
US
), and histology in
MHX
10/Mo‐
lpr
/
lpr
mice. These experimental animals develop
LN
s that are similar in size to human
LN
s. We found that all cell lines showed sensitivity to 5‐
FU
in the in vitro assays. Furthermore, a concentration‐dependent effect of 5‐
FU
to inhibit tumor growth was observed in tumor cells with low invasive growth characteristics, although a significant reduction in metastatic
LN
volume was not detected in
MHX
10/Mo‐
lpr
/
lpr
mice. Adverse effects of 5‐
FU
were not detected. 5‐Fluorouracil administration with a
LDDS
is an effective treatment method for false‐negative metastatic
LN
s. We anticipate that the delivery of anticancer drugs by a
LDDS
will be of great benefit in the prevention and treatment of cancer metastasis via
LN
s.