To investigate the influence of Azolla (A. filiculoides Lam.) incorporated as a green manure and its subsequent growth as a dual crop with rice on simultaneous methane (CH 4 ) and nitrous oxide (N 2 O) emissions from a flooded alluvial soil planted with rice, a pot experiment with three treatments, chemical fertilizers (NPK) as the control, incorporation of Azolla as green manure (AGM), and AGM plus basal chemical fertilizers (NPK+AGM) was conducted in Tsuruoka, Yamagata, Japan in 2017. AGM and NPK +AGM treatments significantly increased CH 4 emissions at early rice growth stages before 63 days after transplanting (DAT) by 123.0% and 176.7% compared to NPK, respectively. At late rice growth stages (after 63 DAT), only the NPK+AGM treatment significantly increased CH 4 emission by 22.1% compared to NPK. However, percentage of CH 4 emitted after 63 DAT relative to the seasonal CH 4 emission followed the order of NPK (86.2%) > AGM (76.5%) > NPK+AGM (73.3%). Higher CH 4 emissions from AGM and NPK +AGM before 63 DAT were attributed to the incorporated Azolla, while the higher emissions after 63 DAT in all treatment groups were ascribed to rice photosynthesis. AGM and NPK+AGM treatments significantly decreased N 2 O emissions by 71.6% and 81.1% compared to NPK, respectively, at early rice growth stages. Azolla incorporation may have restricted N 2 O emission from initial soil nitrate before 63 DAT and not have contributed to N 2 O emissions after 63 DAT. Significantly higher grain yields were observed under the AGM (32.5%) and NPK+AGM (36.3%) compared to NPK. Together, AGM and NPK+AGM treatments significantly increased seasonal CH 4 emissions by 31.5% and 43.5%, and decreased seasonal N 2 O emissions 3.4-and 4.6-fold compared to NPK, respectively. There were no significant differences in the CH 4 emissions per grain yield among the treatments; however compared to NPK, AGM and NPK +AGM treatments significantly reduced N 2 O emissions per grain yield by 78.7% and 84.1%, respectively.