We recently identified two loci, mel1 and mel2, that affect macrophage infection by Mycobacterium marinum. The ability of these loci to confer enhanced infection in trans is presumably due to gene dosage effects since their presence on plasmids increases expression from five-to eightfold. Reasoning that this phenomenon would allow identification of other mycobacterial genes involved in macrophage infection, we conducted a screen of an M. marinum DNA library that provides 2.6-fold coverage of the entire genome for clones that affect macrophage infection. Our preliminary screen identified 76 plasmids that carry loci affecting macrophage infection. We eliminated plasmids that do not confer the expected phenotype when retransformed (70%), that have identical physical maps (5%), or that carry either of the mel1 or mel2 loci (14%) from further consideration. Four loci that confer enhanced infection (mel) and four that confer repressed infection (mrl) of macrophages were identified, and two of each group were chosen for detailed analysis. Saturating transposon mutagenesis was used to identify the loci responsible, and M. marinum mutants were constructed in the genes involved. We expect these genes to provide insight into how mycobacteria parasitize macrophages, an important component of innate immunity.Mycobacterium marinum is a natural pathogen of humans (41, 49, 57), fish, and amphibians (18), causing more than 150 human infections each year in the United States alone (29). Although M. marinum causes primarily skin lesions on the extremities in humans (19), it causes a systemic tuberculous disease in fish and amphibians (30,73,101). M. marinum infections result in granuloma formation, whether in humans, mice, fish, or amphibians (18)(19)(20)101). Granuloma formation occurs because macrophages become infected and allow growth of M. marinum during disease (19, 74) and in laboratory model systems (7,33,69,81). These characteristics of infections, along with the relative ease of manipulation (3,37,82,88), rapid growth rate compared to other pathogenic mycobacteria (18), and the presence of numerous useful virulence models (11,20,27,33,84,89,92), have aroused great interest in the molecular mechanisms of M. marinum pathogenesis. Significant progress has been made toward understanding M. marinum evolution (106), trafficking (7,86,98), secretion (1, 36), gene regulation (6, 82), photochromogenicity (35, 83), cell wall synthesis (3, 24, 37), granuloma formation (23, 27, 97), resistance to oxidative species (78,79,95,96), and mechanisms of macrophage infection (32, 38, 66).As a means to better understand the molecular mechanisms of macrophage infection by M. marinum, we recently screened a genomic library for loci that have the ability to confer enhanced macrophage infection to M. smegmatis (32), a nonpathogenic mycobacterial species that does not infect macrophages efficiently. We identified two M. marinum loci, mel1 and mel2, that confer enhanced macrophage infection to both M. smegmatis and M. marinum. The phenotypic effec...