The phylogenetic relationships of bacterial symbionts from three gall-bearing species in the marine red algal genus Prionitis (Rhodophyta) were inferred from 16S rDNA sequence analysis and compared to host phylogeny also inferred from sequence comparisons (nuclear ribosomal internal-transcribed-spacer region). Gall formation has been described previously on two species of Prionitis, P. lanceolata (from central California) and P. decipiens (from Peru). This investigation reports gall formation on a third related host, Prionitis filiformis. Phylogenetic analyses based on sequence comparisons place the bacteria as a single lineage within the Roseobacter grouping of the ␣ subclass of the division Proteobacteria (99.4 to 98.25% sequence identity among phylotypes). Comparison of symbiont and host molecular phylogenies confirms the presence of three gallbearing algal lineages and is consistent with the hypothesis that these red seaweeds and their bacterial symbionts are coevolving. The species specificity of these associations was investigated in nature by whole-cell hybridization of gall bacteria and in the laboratory by using cross-inoculation trials. Whole-cell in situ hybridization confirmed that a single bacterial symbiont phylotype is present in galls on each host. In laboratory trials, bacterial symbionts were incapable of inducing galls on alternate hosts (including two non-gall-bearing species). Symbiont-host specificity in Prionitis gall formation indicates an effective ecological separation between these closely related symbiont phylotypes and provides an example of a biological context in which to consider the organismic significance of 16S rDNA sequence variation.Marine bacteria are associated with gall formation (tumorigenesis) on a number of species of red algae, although only two reports detail the specific causation of an algal gall by an identified bacterium (5, 10). This probably reflects the general situation encountered when attempting to cultivate, or isolate in pure culture, symbiotic microbes (10,33,44). In the red algal genus Prionitis (Rhodophyta, Halymeniaceae, Gigartinales) gall formation is known from at least four species world wide and is, in the case of Prionitis lanceolata (from central California), associated with the presence of a specific microorganism (5). Despite attempts by several authors, this bacterium has yet to be cultivated or isolated in pure culture (3)(4)(5). No physiological function of these bacterially induced Prionitis galls has been determined, nor is it apparent what, if any, benefit is derived by algal host or bacterial invader. This organismic relationship is termed a symbiosis sensu DeBary as used by Smith, meaning simply the living together of differently named organisms (43). The 16S rDNA phylotype of this eubacterium has been determined from its complete small-subunit ribosomal DNA sequence and whole-cell hybridization used to confirm the inductive role of this symbiont in gall formation (5).The purpose of this investigation was to determine if bacterial gall ...