Abstract-Bacterial luciferase uses long chain aldehydes as substrates. Alkylboronic acid analogs of these substrates with chain lengths of C 7 and C. have been synthesized, characterized, and used as mechanistic probes for the light emitting reaction. They behave as inhibitors in the in vitro luminescence reaction. Contrary to an earlier report (Macheroux and Ghisla, 1985, Nachr. Chem. Tech. Lab. 33, 785-790) they are not substrates for bacterialluciferase, in that they do not lead to light emission and are not oxidized by the flavin-4a-hydroperoxide to the products boric acid and the corresponding alcohol, as would be expected from a Baeyer-Villiger reaction. However, the particular conformation of a putative boronic acid hydroperoxide at the active center might be such that it would preclude a Baeyer-Villiger fragmentation. Thus, while the results do not support the postulate that luciferase proceeds via a Baeyer-Villiger mechanism, they also do not exclude it. A further observation was that the endogenous light emission (no added aldehyde) decays more rapidly than does the luciferase bound flavin-4a-hydroperoxide. This suggests that the endogenous light is not caused by the decomposition of the flavin-4a-hydroperoxide.An adaptation of the Baeyer-Villiger mechanism L-FMNH-4a-OOH + R-CHO (cf. Scheme 1) was proposed by Eberhard and Hastings (1972) to explain this process, and has been frequently quoted in textbooks and reviews as a viable path (Branchaud and Walsh, 1985). However, this mechanism suffers from the lack of a rationale for the generation of an excited state. It has been demonstrated that the flavoprotein cyclohexanone monooxygenase is able to process alkyland arylboronic acids as substrates, and good arguments have been put forward for this reaction proceeding via a Baeyer-Villiger type of mechanism (Branchaud and Walsh, 1985;Walsh and Chen, 1988). Furthermore, the oxidation of boronic acid substrate analogs to the corresponding boric acid