1Prebiotics confer benefits to human health often by promoting the growth of gut bacteria that produce 2 metabolites valuable to the human body, such as short chain fatty acids (SCFAs). While prebiotic 3 selection has strongly focused on maximizing the production of SCFAs, less attention has been paid to 4 gases, a byproduct of SCFA production that also has physiological effects on the human body. Here, we 5 investigate how the content and volume of gas production by human gut microbiota is affected by the 6 chemical composition of the prebiotic and by the composition of the microbiota. We first constructed a 7 linear systems model based on mass and electron balance and compared the theoretical product range of 8 two prebiotics, inulin and pectin. Modeling shows that pectin is more restricted in product space, with less 9 potential for H2 but more potential for CO2 production. An ex vivo experimental system showed pectin 10 degradation produced significantly less H2 than inulin, but CO2 production fell outside the theoretical 11 product range, suggesting fermentation of fecal debris. Microbial community composition also impacted 12 results: methane production was dependent on the presence of Methanobacteria, while inter-individual 13 differences in H2 production during inulin degradation was driven by a Lachnospiraceae taxon. Overall, 14these results suggest that both the chemistry of the prebiotic and the composition of the microbiota are 15 relevant to gas production. Metabolic processes that are relatively prevalent in the microbiome, such as 16H2 production will depend more on substrate, while rare metabolisms like methanogenesis depend more 17 strongly on microbiome composition. 18
Importance 19Prebiotic fermentation in the gut often leads to the co-production of short chain fatty acids (SCFAs) and 20gases. While excess gas production can be a potential problem for those with functional gut disorders, gas 21 production is rarely taken into account during prebiotic design. In this study, we combined the use of 22 theoretical models and an ex vivo experimental platform to illustrate that both the chemical composition 23of the prebiotic and the community composition of the human gut microbiota can affect the volume and 24 content of gas production during prebiotic fermentation. Specifically, more prevalent metabolic processes 25 such as hydrogen production was strongly affected by the oxidation state of the probiotic, while rare 26 metabolisms such as methane production was less affected by the chemical nature of the substrate and 27 entirely dependent on the presence of Methanobacteria in the microbiota. 28 29 30