Recent years have witnessed a growing awareness of the critical role that maritime transport plays in global sustainability, given its significant environmental, economic, and social impacts. Central to this concern is the management of ballast water, which, if not properly treated, can lead to the introduction of invasive species, biodiversity loss, and substantial economic and health repercussions. Traditional risk assessment models often fail to capture the complex uncertainties inherent in environmental risks associated with ballast water. This study introduces an innovative fuzzy logic-based risk assessment model designed to enhance decision-making processes in maritime operations by accurately assessing and mitigating the environmental risks of ballast water discharge. The model, structured using three fuzzy systems, integrates human reasoning with mathematical precision, providing an effective tool for sustainable maritime practices. The integrated fuzzy system employs 18 variables as inputs and yields three outputs (ballasting, ballast exchange, and de-ballasting risk). To evaluate the performance of the developed system, various data sets are used and tested through the MATLAB Fuzzy Toolbox. By aligning maritime operations with sustainability principles, this research contributes to the preservation of marine ecosystems, supports the economic stability of marine-dependent industries, and safeguards public health, underscoring the interconnectivity of maritime transport management with overarching sustainability objectives.