In higher eukaryotes, increasing evidence suggests, gene expression is to a large degree controlled by RNA. Regulatory RNAs have been implicated in the management of neuronal function and plasticity in mammalian brains. However, much of the molecular-mechanistic framework that enables neuronal regulatory RNAs to control gene expression remains poorly understood. Here, we establish molecular mechanisms that underlie the regulatory capacity of neuronal BC RNAs in the translational control of gene expression. We report that regulatory BC RNAs employ a two-pronged approach in translational control. One of two distinct repression mechanisms is mediated by C-loop motifs in BC RNA 3 stem-loop domains. These C-loops bind to eIF4B and prevent the factor's interaction with 18S rRNA of the small ribosomal subunit. In the second mechanism, the central A-rich domains of BC RNAs target eIF4A, specifically inhibiting its RNA helicase activity. Thus, BC RNAs repress translation initiation in a bimodal mechanistic approach. As BC RNA functionality has evolved independently in rodent and primate lineages, our data suggest that BC RNA translational control was necessitated and implemented during mammalian phylogenetic development of complex neural systems.Translational control is an important means for the regulation of gene expression in eukaryotic cells (22). In neurons, the local translation of select mRNAs in synaptodendritic domains is considered a key determinant of neuronal function and plasticity (11,13,28,42). Strict control of local translation is essential to ensure that relevant proteins are synthesized only when and where needed (11). Progress has been made over the last 10 years as translational control mechanisms have been investigated in neurons, and several translational regulators have been identified (33,46). In one of these mechanisms, the effectors of neuronal translational control are regulatory BC RNAs (2,8,(43)(44)(45).Dendritic BC RNAs, neuronal small cytoplasmic RNAs (scRNAs) that include rodent BC1 RNA and primate BC200 RNA (20,21,40,41), are non-protein-coding RNAs that regulate translation at the level of initiation (43, 44). Translational control mediated by BC1 RNA is important in the management of neuronal excitability (8,47,48). Lack of BC1 RNA in a BC1Ϫ/Ϫ animal model triggers increased group I metabotropic glutamate receptor-dependent synthesis of select synaptic proteins (47). Such alterations in the absence of BC1 RNA precipitate neuronal metabotropic glutamate receptor-mediated hyperexcitability that manifests in the form of exaggerated cortical gamma frequency oscillations, epileptogenic neuronal responses, and generalized seizures triggered by auditory stimulation (47, 48). These phenotypical manifestations are consonant with the molecular role of BC RNAs as translational repressors. BC1 RNA inhibits recruitment of the 43S preinitiation complex to the mRNA (44), a rate-limiting step in translation initiation that is mediated by the eIF4 family of eukaryotic initiation factors (6,9,12,31).The...