Mechanical equipment often works on variable speed condition, its corresponding vibration signal presents multi-component, modulation coupling with fast time-varying instantaneous frequency (IF), how to effectively compute IF and realize fasting varying non-stationary signal decoupling separation plays an important role in mechanical system fault diagnosis. In this paper, a sparse representation method called multi-scale chirp sparse representation (MSCSR) is introduced to identify, extract, and trend IF for achieving a highly concentrated time-frequency energy. Simulation demonstrates that the proposed method performs better than traditional IF estimation method. Furthermore, an adaptive time-varying filter is constructed using the extracted instantaneous frequency to decouple non-stationary fast signal. Ultimately, by rapid instantaneous frequency fluctuation experiment, the effectiveness of proposed method for fast strong time-varying signal is validated, it can effectively extract rapid oscillation instantaneous frequency, and the error is less than 10%.