In the course of a series of studies conducted to investigate the long‐term behavior of 129I (which has a half‐life of 16 million years) in the environment, seasonal variation in the concentration of stable iodine (127I) in precipitation and soil water to a depth of 2.5 m in a forest plot, an upland field and a paddy field in the upland area of Tsukuba, Japan, were determined. Iodine concentration in precipitation tended to increase during the summer (high air temperature) season and low‐rainfall period, and a positive high correlation was observed between annual rainfall and the annual amount of iodine supplied by precipitation. No seasonal variations in iodine concentration in soil water were observed at any depth in the forest plot and upland field unlike at shallow depths (0.2 and 0.5 m) in the paddy field. In the paddy field, from the beginning of summer irrigation, under flooding conditions, iodine concentration in soil water at shallow depths (0.2 and 0.5 m) continuously increased, and immediately before mid‐summer (intermittent) drainage and drainage, the maximum iodine concentration (approximately 50 µg L−1) and lowest Eh values (approximately −150 to −200 mV) were recorded. These high iodine concentration levels and low Eh values were ascribed to high air temperature (approximately > 25°C on average every 10 days) and the continuation of the groundwater level above the ground surface. As for the temporary winter irrigation period (mean daily air temperature 2−4°C), the iodine concentration was low (1.7–3.7 µg L−1) at all depths, as was the case in the non‐irrigation period. After mid‐summer drainage, and drainage, the iodine concentration in soil water at depths of 0.2 and 0.5 m decreased drastically as the groundwater level decreased. The mean annual amount of iodine accumulated in the surface soil horizons (0–0.67 m) in the forest plot was estimated to be approximately 2.9 mg m−2 (7.5 µg kg−1 dry soil), which coincided with the mean annual amount of iodine supplied to the earth surface by precipitation. A mildly oxidative subsurface 2Bw horizon (0.60–0.89 m) in the paddy field was estimated to illuviate approximately 3.1 mg m−2 (20 µg kg−1 dry soil) of iodine annually by retaining iodine in the soil water percolated to this horizon.