Aiming at establishing structure-property relationships for twophoton absorption, we present the results of an in silico investigation of dyes containing fluoroborylene (BF) groups. More specifically, we analyze the electronic properties corresponding to the one-and two-photon excitation to two lowestlying singlet states (S 1 and S 2 ) using TD-DFT and CC2 methods. BF-and BF 2 -containing fluorescent dyes are in the limelight, but it remains challenging to reach the larger electronic two-photon transition strengths needed in bioimaging applications. Hence, we put an emphasis on maximizing those strengths through structural variations. To this end, we consider 138 unique molecules deriving from five different structural cores present-ing BF/BF 2 groups. This molecular set encompasses representatives of three architectures, built with different arrangements of electron-donating (D) and electron-withdrawing (A) moieties: D-A, D-A-D and D-A-A-D. In addition, we consider several πconjugated linkers of different lengths, composed of ethylene (en) and 1,4-phenylene (PH) units (up to -enPHenPH-), and a panel of substituents (R = H, OMe, NMe 2 and NPh 2 ). For the twophoton transitions, it is shown that not only the linker extension and the strength of the electron-donating substituent are crucial for maximizing the two-photon activity but also the central core possessing fluoroborylene unit. The results have been rationalized by using a generalized three-level model.