Root cultures of Swertia chirata (Gentianaceae) were grown with supplements of [1‐13C]glucose, [U‐13C6]glucose or [carboxy‐13C]shikimic acid. 1,3,5,8‐Tetrahydroxyxanthone was isolated and analysed by quantitative NMR analysis. The observed isotopomer distribution shows that 1,3,5,8‐tetrahydroxyxanthone is biosynthesized via a polyketide‐type pathway. The starter unit, 3‐hydroxybenzoyl‐CoA, is obtained from an early shikimate pathway intermediate. Phenylalanine, cinnamic acid and benzoic acid were ruled out as intermediates.