2009
DOI: 10.1088/0957-4484/21/1/015202
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Bias-dependent amino-acid-induced conductance changes in short semi-metallic carbon nanotubes

Abstract: Abstract.We study the interaction between short semi-metallic carbon nanotubes and different amino acids using molecular dynamics and ab initio (density functional theory/non-equilibrium Green's function) simulations. We identify two different mechanisms of nanotube-conductance-change upon adsorption of amino acids: one due to the change of the coordinates of the nanotube arising from van der Waals interaction forces with the adsorbed amino acid; and one due to electrostatic interactions, which appear only in … Show more

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Cited by 18 publications
(11 citation statements)
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References 30 publications
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“…It can be noted that the interaction potential employed in the present study is commonly used in predicting the dynamics of CNT-based systems with a variety of other molecules such as water, ethanol, DNA, lipids, amino acids, etc. [24,27,[31][32][33][34][35] It is also in a good agreement with the experimental properties of water. [26] Moreover, the potential is very consistent for a wide range of temperature variation.…”
Section: Model and Simulation Methodssupporting
confidence: 78%
See 1 more Smart Citation
“…It can be noted that the interaction potential employed in the present study is commonly used in predicting the dynamics of CNT-based systems with a variety of other molecules such as water, ethanol, DNA, lipids, amino acids, etc. [24,27,[31][32][33][34][35] It is also in a good agreement with the experimental properties of water. [26] Moreover, the potential is very consistent for a wide range of temperature variation.…”
Section: Model and Simulation Methodssupporting
confidence: 78%
“…The values of ε CO and σ CO have been chosen to be 0.4787 kJ mol −1 and 0.3275 nm, respectively. It can be noted that the interaction potential employed in the present study is commonly used in predicting the dynamics of CNT‐based systems with a variety of other molecules such as water, ethanol, DNA, lipids, amino acids, etc . It is also in a good agreement with the experimental properties of water .…”
Section: Model and Simulation Methodssupporting
confidence: 64%
“…. The structural and energetic evolution of CNTs and fullerenes predicted by this model potential has been established to be accurate as reported in different studies . Also, the bending geometries predicted by this potential matches well with other commonly used models (AIREBO, CHARMM, etc.)…”
Section: Model and Simulation Methodssupporting
confidence: 74%
“…It can be noted that the chosen model has been proven to be suitable for predicting the dynamics of pure carbon systems as well as carbon systems with a variety of other molecules such as water, DNA, amino acids, etc. . The structural and energetic evolution of CNTs and fullerenes predicted by this model potential has been established to be accurate as reported in different studies .…”
Section: Model and Simulation Methodsmentioning
confidence: 59%
“…Thus, the small x o value suggests that the SWNT is responding to charge motions close to the C90 attachment site, rather than from events occurring exclusively at the active site, such as substrate binding. As predicted by theoretical modeling 40,41 , single molecule events at the enzyme’s active site should be very difficult to detect electronically under these screening conditions. More likely, large-scale, substrate-induced conformational motions alter the positions of amino acids near the SWNT C90 attachment site.…”
Section: Resultsmentioning
confidence: 99%