Cdc6p is a key regulator of the cell cycle in eukaryotes and is a member of the AAA ؉ (ATPases associated with a variety of cellular activities) family of proteins. In this family of proteins, the sensor 1 and sensor 2 regions are important for their function and ATPase activity. Here, site-directed mutagenesis has been used to examine the role of these regions of Saccharomyces cerevisiae Cdc6p in controlling the cell cycle progression and initiation of DNA replication. Two important amino acid residues (Asn 263 in sensor 1 and Arg 332 in sensor 2) were identified as key residues for Cdc6p function in vivo. Cells expressing mutant Cdc6p (N263A or R332E) grew slowly and accumulated in the S phase. In cells expressing mutant Cdc6p, loading of the minichromosome maintenance (MCM) complex of proteins was decreased, suggesting that the slow progression of S phase in these cells was due to inefficient MCM loading on chromatin. Purified wild type Cdc6p but not mutant Cdc6p (N263A and R332E) caused the structural modification of origin recognition complex proteins. These results are consistent with the idea that Cdc6p uses its ATPase activity to change the conformation of origin recognition complex, and then together they recruit the MCM complex.To coordinate DNA replication with cell division, initiation of chromosomal DNA replication must be strictly regulated. Initiation of eukaryotic chromosomal DNA replication is achieved by the stepwise assembly of various protein complexes at origins of DNA replication (1-5). In vivo footprinting analysis suggests that a protein complex, called a prereplication complex (pre-RC), 1 is formed in the G 1 phase on each origin of chromosomal DNA replication (6). At the G 1 /S boundary, cyclindependent protein kinases activate the pre-RC to form a preinitiation complex that then initiates DNA replication in a temporally specific manner (1, 2, 5-8). Thus, the molecular mechanism of formation of the pre-RC and its regulation are important for understanding how the cell cycle regulates initiation of chromosomal DNA replication.Studies in the yeast Saccharomyces cerevisiae have shown that at least four kinds of proteins are components of the pre-RC, including the origin recognition complex (ORC), Cdc6p, and the six minichromosome maintenance (MCM) proteins (9 -18). Genetic analysis using mutant S. cerevisiae strains suggested that Cdc6p first binds to ORC, which is bound to origins of chromosomal DNA replication throughout the cell cycle, and then MCM is recruited onto the origins to form the pre-RC (13,15,17,19). But the precise molecular mechanism of pre-RC formation, including how the MCM complex is recruited on chromatin that is already occupied by ORC and Cdc6p, is unknown. Recently, Cdt1 was identified in Schizosaccharomyces pombe and Xenopus laevis as another component required for formation of the pre-RC (20, 21), and the yeast Tah11p protein is likely the S. cerevisiae ortholog of Cdt1, 2 but its biochemical role in DNA replication is not certain.In yeast, MCM loading onto chromat...