The ectodomain of the gD protein of herpes simplex viruses (HSVs) plays an important role in viral entry by binding to specific cellular coreceptors and mediating viral entry to the host cells. In the present study, we isolated RNA aptamers (aptamer-1 and aptamer-5) that specifically bind to the gD protein of HSV-1 with high affinity and are able to discriminate the gD protein of a different virus, HSV-2. Aptamer-1 efficiently interfered with the interaction between the gD protein and the HSV-1 target cell receptor (HVEM) in a dose-dependent manner. The 50% effective concentration (EC 50 ) of aptamer-1 was estimated to be in the nanomolar range (60 nM). Furthermore, aptamer-1 was analyzed for anti-HSV-1 activity by using plaque assays, and it efficiently inhibited viral entry with an estimated K i of 0.8 M. To expand the future applications of aptamer-1, a shorter variant was designed by using both mapping and boundary analyses, resulting in the mini-1 aptamer (44-mer). Compared to the fulllength aptamer, mini-1 had at least as high an affinity, specificity, and ability to interfere with gD-HVEM interactions. These studies suggest that the mini-1 aptamer could be explored further as an anti-HSV-1 topical therapy designed to prevent the risk of acquiring HSV-1 infection through physical contact.
Herpes simplex virus 1 (HSV-1) and HSV-2 are widespread human pathogens that infect primarily epithelial tissues before spreading to the nervous system, where they become latent. The genomes of HSV-1 and HSV-2 share 50 to 70% homology, and the two viruses also share several cross-reactive epitopes. The entry of HSV into the host cell begins with the binding of viral proteins gC and gB to proteoglycans on the host cell surface. This binding interaction is then followed by the coordinated action of four essential glycoproteins: gD, gB, gH, and gL (3, 30). Of these four glycoproteins, the gD protein is required for binding to the specific cellular receptors for viral entry. The gD protein recognizes two protein receptors, herpesvirus entry mediator (HVEM) (34) and nectin-1 (25). In addition to these receptor proteins, HSV-1 entry can also be mediated by 3-O-sulfated-modified heparan sulfate (29). The gD proteins of HSV-1 and HSV-2 are highly homologous proteins, with a sequence identity of around 86% within the ectodomain region (amino acids [aa] 1 to 319).The structures of the gD protein of HSV-1 have been solved, both in the absence (Fig. 1a) (4) and in the presence (Fig. 1b) (20) of its cognate receptor, HVEM. Recently, the structure of gD bound to another receptor, nectin-1, was also determined by two groups (Fig. 1c and d) (8, 35). Those studies revealed that gD contains a V-like Ig fold between residues 56 and 184. This structural feature is commonly found in cell surface adhesion molecules. N-and C-terminal extensions flank this fold and are unfolded and disordered in the absence of the gD receptor. However, in the HVEM-bound form, the N terminus of gD folds into a hairpin structure that binds to HVEM (4). This recept...