We report the design and highly enantioselective synthesis of a potent analog of the spliceosome inhibitor FR901464, based on a non-natural product scaffold. The design of this compound was facilitated by a pharmacophore hypothesis that assumed key interaction types that are common to FR901464 and an otherwise unrelated natural product (pladienolide). The synthesis allows for the preparation of numerous novel analogs. We present results on the in vitro activity for this compound against several tumor cell lines.A novel mechanism of anti-tumor activity was recently elucidated for two structurally distinct fermentation products (see Figure 1) 1 and pladienolide 2 (actually a set of closely related compounds that have been designated pladienolides A-G, isolated from Streptomyces platensis) 3 and FR901464 (isolated from Pseudomonas sp. No 2663). 4-6 These natural products have previously been reported to have a similar novel effect on the cell cycle in mammalian cell lines; cell cycle arrest at the G1 and G2/M phases. 3, 4 . This effect on the cell cycle distinguished these compounds from other anti-tumor agents that also inhibit proliferation in tumors and act at previously identified molecular targets. 3-5 This interaction with the spliceosome leads to the inhibition of mRNA splicing and the translation of unspliced mRNA, which ultimately results in the observed effects on the cell cycle. 2, 7 The first of these natural products to be discovered, FR901464, showed activity in in vivo cancer animal models, but showed a relatively narrow therapeutic window. 4 On the other hand pladienolide-based compounds (first reported in 2004) have shown a very broad therapeutic window. 2 Of the seven pladienolides, pladienolide B was reported to have the most promising anti-cancer activity in vivo, and it has recently been reported that a derivative of pladienolide B has entered human clinical trials for cancer. 2Motivated by the recognition that FR901464 and pladienolide have a very similar (or possibly identical) mechanism of action, we compared overlays of molecular models of the two natural products. Upon inspection of these overlays we recognized that despite the gross dissimilarities *To whom correspondence should be addressed. . E-mail: E-mail: thomas.webb@stjude.org. Supporting Information Available: The supporting information includes the general experimental methods, procedures for the synthesis of 9-13 and 15-18, as well as full experimental methods for the cell cycle analysis and the in vitro cytotoxicity assays. This material is available free of charge via theInternet at http://pubs.acs.org. between FR901464 and pladienolide, both molecules share certain common key features (which are known to be critical to their activity) that can overlap in low energy conformations in three dimensions (see Figure 2). It is known from previous studies that the orientation of the acetyl group and the presence of the epoxide are important in conferring activity to FR901464 analogs, 8, 9 but that the glycosidic hydroxyl group...