Molecular mechanisms associated with biochar-elicited suppression of soilborne plant diseases and improved plant performance are not well understood. A stem base inoculation approach was used to explore the ability of biochar to induce systemic resistance in tomato plants against crown rot caused by a soilborne pathogen, Fusarium oxysporum f. sp. radicis lycopersici. RnA-seq transcriptome profiling of tomato, and experiments with jasmonic and salycilic acid deficient tomato mutants, were performed to elucidate the in planta molecular mechanisms involved in induced resistance. Biochar (produced from greenhouse plant wastes) was found to mediate systemic resistance against fusarium crown rot and to simultaneously improve tomato plant growth and physiological parameters by up to 63%. Transcriptomic analysis (RNA-seq) of tomato demonstrated that biochar had a priming effect on gene expression and upregulated the pathways and genes associated with plant defense and growth such as jasmonic acid, brassinosteroids, cytokinins, auxin and synthesis of flavonoid, phenylpropanoids and cell wall. In contrast, biosynthesis and signaling of the salicylic acid pathway was downregulated. Upregulation of genes and pathways involved in plant defense and plant growth may partially explain the significant disease suppression and improvement in plant performance observed in the presence of biochar. Biochar (the solid co-product of biomass pyrolysis) is a carbon sequestrating soil amendment reported to improve plant performance and reduce the severity of both foliar and soilborne plant diseases 1,2. Nevertheless, results are highly dependent on the biochar dose, feedstock, production conditions and pathosystems 2-5. The variability in plants responses and a poor understanding of the mechanisms involved in plant growth promotion and disease suppression are among the factors hampering the widespread adoption of biochar as a beneficial soil amendment. Biochar amendment-elicited suppression of diseases caused by foliar pathogens is clearly mediated by induced systemic resistance, given that biochar is spatially distant from the site of pathogen attack 6-9. In contrast, there are numerous means by which biochar may influence diseases caused by soilborne plant pathogens. Biochar and pathogens both reside in the soil and thus biochar can potentially have direct antagonistic effects toward the pathogen 10,11 as well as indirect interactions via induction of systemic resistance in the plant 10-12. Induction of the plant's innate defense system can decrease its susceptibility to diseases caused by a broad range of pathogens and parasites, including soilborne pathogens 13. Two major forms of induced resistance (IR) have been