A novel protein disulfide isomerase gene, pdi-3, was isolated from the nematode Caenorhabditis elegans. This gene encodes an enzyme related to the ERp60 class of thioredoxin proteins and was found to exhibit unusual enzymatic properties. Recombinant protein displayed both disulfide bond isomerase activity and calcium-dependent transglutaminase-like cross-linking activity. The pdi-3 transcript was developmentally constitutively expressed, and the encoded protein is present in many tissues including the gut and the hypodermis. The nematode hypodermis synthesizes the essential collagenous extracellular matrix (ECM) called the cuticle. Transcript disruption via double-stranded RNA interference resulted in dramatic and specific synthetic phenotypes in several C. elegans mutant alleles with weakened cuticles: sqt-3(e2117), dpy-18(e364, ok162, and bx26). These nematodes displayed severe dumpy phenotypes and disrupted lateral alae, a destabilized cuticle and abnormal male and hermaphrodite tail morphologies. These defects were confirmed to be consistent with hypodermal seam cell abnormalities and corresponded with the severe disruption of a cuticle collagen. Wild type nematodes did not exhibit observable morphological defects; however, cuticle collagen localization was mildly disrupted following pdi-3 RNA interference. The unusual thioredoxin enzyme, protein disulfide isomerase-3, may therefore play a role in ECM assembly. This enzyme is required for the proper maintenance of postembryonic body shape in strains with a weakened cuticle, perhaps through ECM stabilization via cross-linking activity, disulfide isomerase protein folding activity, protein disulfide isomerase chaperone activity, or via multifunctional events.This nematode exoskeleton or cuticle is a true extracellular matrix (ECM) 1 that is essential for viability, helps maintain the post-embryonic body shape of the animal, and protects it from adverse environmental factors (1, 2). This structure is involved in locomotion via the attachment of opposed muscles, and in Caenorhabditis elegans, the cuticle is initially synthesized in the embryo and then shed and replaced four times at the end of each larval stage (3), resulting in five structurally and chemically distinct stage-specific ECMs (4). This ECM is predominantly composed of small highly cross-linked collagens, and in C. elegans, over 150 genes encode cuticle collagens (2), representing 1% of the entire genome (4). The assembly of these collagens to form the cuticle is under tight temporal control (2) and involves numerous complex post-translational modifications (4). Mutations in C. elegans cuticle collagen genes can result in abnormal body shape (1). One such abnormal phenotype is the dumpy (Dpy) phenotype, a shortening of the body length and widening of the animal, and several Dpy loci have been assigned to mutations in individual collagen genes, namely dpy-7 (2), dpy-2 and dpy-10 (5), and dpy-13 (6). The Dpy phenotype has additionally been shown to be the result of mutations in genes coding for enzy...