Yam rot caused by fungal pathogens has been of great concern to farmers in Nigeria and farmers of South-South Geopolitical zone of Nigeria are not exempted of this yam spoilage plight. This study was carried out on yam cultivated and harvested in the South-South of Nigeria to isolate and identify eco-friendly biological control agent (Trichoderma sp.) that could be used to control yam rot-causing fungi. The yam samples were purchased from local farmers in Rivers state. Trichoderma sp. was isolated from healthy yam peels, while the fungal pathogens were isolated from the rotting part of yam by serial dilution and then pour plating. The fungi isolated and identified as pathogens were Penicillium oxalicum, Penicillium roquefortii, Aspergillus niger, Aspergillus flavus, Rhizopus nigricans and Rhodotora sp., while the isolated biological control agent was identified as Trichoderma harzianum. An antagonism test of the T. harzianum against all the pathogens was conducted by co-culture method and the result in percentage inhibition were P. oxalicum (22.00%), P. roquefortii (26.50%), A. niger (49.80%), A. flavus (40.00%), Rhodotora sp. (31.58%) and no antagonism against R. nigricans (0%). The result obtained in this study revealed that Trichorderma harzianum has a broad inhibitory capability against yam rot-causing fungal pathogen. Therefore, T. harzianum can be effectively utilized by farmers to safely control the menace of yam rot caused by fungal pathogen.