Studies of plant tropisms, the directed growth toward or away from external stimuli such as light and gravity, began more than a century ago. Yet biochemical, physiological, and especially molecular mechanisms of plant tropic responses remain for the most part unclear. We examined expression of 8,300 genes during early stages of the gravitropic response using high-density oligonucleotide probe microarrays. Approximately 1.7% of the genes represented on the array exhibited significant expression changes within the first 30 min of gravity stimulation. Among gravity-induced genes were a number of genes previously implicated to be involved in gravitropism. However, a much larger number of the identified genes have not been previously associated with gravitropism. Because reorientation of plants may also expose plants to mechanical perturbations, we also compared the effects of a gentle mechanical perturbation on mRNA levels during the gravity response. It was found that approximately 39% of apparently gravity-regulated genes were also regulated by the mechanical perturbation caused by plant reorientation. Our study revealed the induction of complex gene expression patterns as a consequence of gravitropic reorientation and points to an interplay between the gravitropic and mechanical responses and to the extreme sensitivity of plants to even very gentle mechanical perturbations.Though studies of plant tropisms began more than a century ago (Knight, 1806; Ciesielski, 1872; Darwin, 1880), the mechanisms of plant tropic responses, including gravitropism, are for the most part still unknown. It is believed that the gravitropic response is a well-coordinated process regulated through gravity signal perception and transduction, gene transcription, and translation. Previous research findings, based largely on physiological, biochemical, and genetic experimental evidence, have implicated a role for starch-filled plastids, amyloplasts, as statoliths in gravity perception (Volkmann and Sievers, 1979;Sack, 1991; Blancaflor et al., 1998;Moctezuma and Feldman, 1999a), and Ca 2ϩ (Belyavskaya, 1996; Lu and Feldman, 1997;Sinclair and Trewavas, 1997) , 1981;Zieschang et al., 1993;Scott and Allen, 1999), K ϩ (Philippar et al., 1999), auxin (Cholodny, 1928;Went, 1928; Feldman, 1985;Parker and Briggs, 1990; Konings, 1995; Chen et al., 1999;Moctezuma and Feldman, 1999b), the cytoskeleton (Baluska and Hasenstein, 1997), and the cell wall (Cosgrove, 1997; Edelmann, 1997; Hejnowicz, 1997) in gravity signal transduction. Earlier work has also implicated a need for both transcription and translation regulation in the root gravity response (Feldman, 1981). Yet in only a few studies have attempts been made to analyze gravity-induced changes at the transcriptional level (Guilfoyle et al., 1993; Li et al., 1999;Philippar et al., 1999). Recently developed cDNA and oligonucleotide probe microarray technologies now allow for accurate measurement of mRNA transcript abundance for hundreds or thousands of genes in parallel (Schena et al., 1995(Sc...