In the present work, loop-mediated isothermal amplification (LAMP) and hyperbranched rolling circle amplification (HRCA) methods were developed to detect and distinguish different lethal
Amanita
species. Specific LAMP primers and HRCA padlock probes for species-specific identification and a set of universal LAMP primers for lethal
Amanita
species were designed and tested. The results indicated that the LAMP-based assay was able to discriminate introclade lethal
Amanita
species but was not able to discriminate intraclade species perfectly, while the HRCA-based assay could discriminate whether introclade or intraclade species. The universal LAMP primers were positive for 10 lethal species of
Amanita
section
Phalloideae
and negative for 16 species of
Amanita
outside section
Phalloideae
. The detection limits of LMAP and HRCA were 10 and 1 pg of genomic DNA per reaction, respectively. In conclusion, the two methods could be rapid, specific, sensitive and low-cost tools for the identification of lethal
Amanita
species.