“…31 The close correlation of cytogenetic abnormalities with patterns of dysplastic marrow morphology, ineffective hematopoiesis, and leukemic transformation strongly suggests their pathophysiologic roles in marrow failure and leukemogenesis. 11,32,33 As early hematopoietic cells are readily identified and isolated based on the presence of the CD34 antigen, we examined purified populations of hematopoietic stem and progenitor cells using DNA microarrays, which allow assessment in minimally manipulated cells of the expression levels of thousands of genes simultaneously. Because CD34 cells are infrequent even in normal BM and particularly so in many MDS patients, we applied the accepted modifications of sample pooling and RNA amplification; these methods allow comparison of gene expression patterns between standard protocols with single-donor and pooled RNA samples and a new T7-linear amplification protocol when RNA quantities are insufficient.…”