The stable carbon isotope compositions of dissolved inorganic carbon (δ 13 C DIC) and dissolved organic carbon (δ 13 C DOC) are readily affected by postsampling microbial activity if not adequately preserved. Existing preservation methods require rapid chilling, analysis, and/or toxic chemicals, all challenging to use safely in the field and during remote field seasons. Therefore, a preservation method that is safe but also effective over a range of storage times is needed when sampling waters at very remote sites. Methods: Two samples, with different dissolved inorganic carbon (DIC) and dissolved organic carbon (DOC) concentrations, were filtered with a 0.2-μm filter and preserved with six different methods, mercuric chloride, copper sulfate, phosphoric acid, benzalkonium chloride, zinc chloride, hydrochloric acid, and a filter-only control. These samples were held at 4 C, 22 C, or 35 C. Regular measurement of the DIC and DOC δ 13 C values were made over the following 60 days for δ 13 C DIC and 66 days for δ 13 C DOC. Results: Over the course of the experiment, mercuric chloride, copper sulfate, zinc chloride, and benzalkonium chloride resulted in δ 13 C DIC fractionation at both 4 C and 22 C. Only filtering to 0.2 μm at the time of collection, with or without acidification with phosphoric acid, resulted in minimal isotopic fractionation at both 4 C and 22 C and over the entirety of the experiment. For δ 13 C DOC values, only filtering to 0.2 μm minimized fractionation for both bulk and vial storage over 66 days at 22 C. Conclusions: Filtering to 0.2 μm at the time of collection is more effective than the use of toxic chemicals for measuring δ 13 C DIC and δ 13 C DOC values. Phosphoric acid is as effective as only filtering for δ 13 C DIC and may be ideal depending on sampling considerations. These results demonstrate not only that water samples can be preserved for δ 13 C DIC and δ 13 C DOC analysis for long periods, but that preservation is best accomplished with non-toxic or low-toxicity methods. 1 | INTRODUCTION Knowledge of the concentration, composition, and consumption of carbon in aqueous systems is a powerful tool for understanding water movement, storage, and sources. In an aquatic ecosystem, water sourced from environments with high organic loads will typically have higher dissolved organic carbon (DOC) concentrations, along with stable carbon isotope ratios (δ 13 C values) reflective of the predominant photosynthetic pathway. 1 Conversely, water with extended contact with carbonate rocks typically has high dissolved inorganic carbon (DIC) concentrations, with δ 13 C values representative of soil and carbonate sources. 2 With time, the DOC can be consumed by biological and microbial activity, while the DIC can exchange with the organic carbon pool. 1 To be able to accurately characterize carbon sources and secondary processes, however, no additional alteration of samples can occur after collection. Without proper preservation,