13Eimeria pose a risk to all livestock species as a cause of coccidiosis, reducing 14 productivity and compromising animal welfare. Pressure to reduce drug use in the 15 food chain makes development of cost-effective vaccines against Eimeria essential. 16For novel vaccines to be successful, understanding genetic and antigenic diversity in 17 field populations is key. Eimeria species that infect chickens are most significant, with 18Eimeria tenella among the best studied and most economically important. Genome-19 wide single nucleotide polymorphism-based haplotyping has been used to determine 20 population structure, genotype distribution, and potential for cross-fertilization 21 between E. tenella strains. Here, we discuss recent developments in our 22 understanding of diversity for Eimeria in relation to its specialized lifecycle, 23 distribution across the globe, and the challenges posed to vaccine development. More than 60 billion chickens are produced in the world every year, yielding 52