Nitrogenase activity in Rhodospirillum rubrum and in some other photosynthetic bacteria is regulated in part by the availability of light. This regulation is through a posttranslational modification system that is itself regulated by P II homologs in the cell. P II is one of the most broadly distributed regulatory proteins in nature and directly or indirectly senses nitrogen and carbon signals in the cell. However, its possible role in responding to light availability remains unclear. Because P II binds ATP, we tested the hypothesis that removal of light would affect P II by changing intracellular ATP levels, and this in turn would affect the regulation of nitrogenase activity. This in vivo test involved a variety of different methods for the measurement of ATP, as well as the deliberate perturbation of intracellular ATP levels by chemical and genetic means. To our surprise, we found fairly normal levels of nitrogenase activity and posttranslational regulation of nitrogenase even under conditions of drastically reduced ATP levels. This indicates that low ATP levels have no more than a modest impact on the P II -mediated regulation of NifA activity and on the posttranslational regulation of nitrogenase activity. The relatively high nitrogenase activity also shows that the ATP-dependent electron flux from dinitrogenase reductase to dinitrogenase is also surprisingly insensitive to a depleted ATP level. These in vivo results disprove the simple model of ATP as the key energy signal to P II under these conditions. We currently suppose that the ratio of ADP/ATP might be the relevant signal, as suggested by a number of recent in vitro analyses.The P II family of regulatory proteins is one of the most broadly distributed in nature, being found in all three domains of life (1,20,39,51). P II was originally found to be involved in the regulation of glutamine synthetase (GS) activity by interaction with adenylyltransferase (ATase or GlnE, encoded by glnE) (63, 65). However, P II has subsequently been shown to regulate many other processes involving nitrogen assimilation and metabolism, by directly interacting with different proteins, termed P II receptors (51). In many organisms, more than one P II homolog has been identified. The "housekeeping" homolog is usually referred to as GlnB, encoded by glnB, with other secondary homologs named GlnK, GlnK 2 , GlnJ, GlnY, GlnZ, or Pz (1,12,47,69,78). In a few species of Archaea, a distinct group of P II proteins was named NifI, which is encoded by the nifH-linked gene (39).Because of its physiological diversity, the photosynthetic bacterium Rhodospirillum rubrum is a good model organism in which to study the role of P II . It has three P II homologsGlnB, GlnK, and GlnJ-that play distinct and overlapping functions by interacting with at least six receptors in the cell (71,78,81). Some of these are common to other bacteria, such as GlnE (ATase) that is involved in the regulation for GS activity, the two-component regulatory protein NtrB, and the ammonium transporter (gas channel) A...