The biogeography and ecological preferences of Neotropical freshwater ostracods are poorly known, and more so the dynamics of populations and habitat selection of species living in pleustonic environments of temporary ponds. In the present survey we analyze the population changes of ostracods living in pleustonic environments of small freshwater bodies on Martín García Island (Río de la Plata, Argentina). Between June 2005 and June 2007, monthly samples of floating vegetation from eight different ponds on the island were collected, and limnological parameters were measured in situ. The results of multivariate logistic regression showed that the presence of ostracods was significantly related to high dissolved oxygen content and high water temperature. In addition, multivariate regression analysis indicated that, when ostracods were present, their total abundance was negatively related to floating vegetation dry weight. Four ostracod species were found: Strandesia bicuspis, Chlamydotheca incisa, Cypridopsis vidua, and Bradleytriebella trispinosa. The seasonal variation in abundances indicated that populations of the most common species, S. bicuspis and C. incisa, were denser during the summer and autumn months. The results of canonical correspondence analysis showed that individuals of S. bicuspis were more abundant at higher temperatures and lower conductivity than C. incisa. Further research is needed to clarify the observed negative correlation between floating vegetation dry weight and ostracod density and the possible differential thermal preference of the two species studied.