Land resources have been under tremendous anthropogenic pressure with the consequence of their degradation. It is therefore necessary that the land resources must be managed effectively for sustainable development. Different from the developed countries, carbon inventories and data bank to monitor carbon sequestration potential of different ecosystems are unavailable in India. Micro-level studies are essential for sustainable land use management for a land scarce nation like India. To achieve the desirable goal of the present study, a total of 33 tree-based land uses were identified from forested and agricultural landscapes. Of these total land uses, five were in forest landscapes and rest in agricultural landscapes categorized into forest tree plantations (8 land uses), agroforestry (nine land uses), commercial crop plantations (six land uses) and fruit orchards (five land uses). A stratified random nested quadrate sampling method was adopted for vegetation analysis of the different land uses. The SOC, biomass and carbon accumulation in the tree-based land uses were significantly different from each other. Mixed forest soil had the highest amount of SOC, primary nutrients, standing biomass carbon, and ecosystem carbon. Positive correlations were observed between SOC, total standing biomass, litter production, and ecosystem carbon. The sequence of best tree based land uses in terms of total SOC (up to 60 cm depth), total plant biomass, total plant biomass carbon and ecosystem carbon was mixed species forest (126.67, 781.21, 390.61 and 517.27) > sole tree species stands in forest landscape (109.71, 192.56, 96.28 and 205.98) > tea plantations (103.19, 77.07, 38.54 and 141.74) > homegardens (90.34, 97.38, 48.69 and 139.02) > mixed plantation of Anthocephalus cadamba + Swietenia macrophylla (60.07, 111.86, 55.93 and 116.02) > Swietenia macrophylla based agroforestry (62.49, 83.82, 41.91 and 104.40) > mixed plantation of Tectona grandis + Milvus migrans (60.0, 85.97, 42.99 and 102.90). Similarly, the order of the major land uses was forest > commercial crop plantation > forest tree plantations > agroforestry > fruit orchards. The overall average ecosystem carbon accumulation in forests was 3.24 times more than the land uses in agricultural landscapes. The ecosystem carbon accumulation in the tree-based land uses in both forest and agricultural landscape was highly variable and was significantly different from each other. Land use conversion from forest to agriculture can reduce more than half of the carbon stock, but converting into homegardens, tree plantations or agroforestry enhanced carbon storage of the land use systems. The present findings can be used as baseline information for developing prediction models for probable effects of different land use, future intervention and sustainable management of land use systems.