We It is now possible by DNA transfection to engineer trypanosomatid parasites that overexpress or lack a given gene product. Since trypanosomatids are generally diploid and it is currently either impossible (Leishmania) or difficult (Trypanosoma brucei) to perform sexual crosses, homozygous gene knockouts are usually obtained by the process ofdouble gene replacement with independent selectable markers (1). This approach is limited to genes whose function is not essential during in vitro culture; however, many interesting parasite-specific molecules are known or likely to be nonessential for growth in vitro (2, 3). One approach to the study of essential genes is to use situations in which knockouts are conditionally lethal. We have shown that homozygous knockouts of the Leishmania major dhfr-ts (dihydrofolate reductase-thymidylate synthese) locus can be obtained if parasites are provided with thymidine (1, 4), in keeping with the expected role of DHFR-TS in intermediary metabolism. The dhfr-ts knockout will facilitate studies of folate metabolism and antifolate chemotherapy, and conditionally lethal mutants like these thy-(thymidine negative) auxotrophs may have important applications in the development of safe, avirulent lines that could be used as potential vaccination strains, as could parasites lacking molecules essential for infectivity in vivo but nonessential for growth in vitro (1). Since virulent Leishmania may provide superior vaccination potential relative to attenuated lines, we attempted to develop homozygous knockouts of dhfr-ts in virulent lines. To our surprise, we were unable to obtain the desired mutants, despite the ease with which such knockouts were obtained with attenuated lines (1). Instead, virulent Leishmania parasites possess a remarkable ability to undergo changes in chromosome number, permitting retention of one or more chromosomes containing dhfr-ts despite the success of the double targeting.MATERIALS AND METHODS Virulent L. major were LV39 clone 5 (Rho/SU/59/P) and Friedlin (MHOM/JL/80/Friedlin); attenuated lines were LT252 clone CC-1 (MHOM/IR/83/IR; ref. 5) and CB rev3 (6, 7). Cells were grown in M199 medium and transfected by electroporation and plating as described (1,4,5). KS supplements were added in transfections expected to yield dhfr-ts-lines (4). Virulent parasites recovered from lesions were cultured in NNN medium (7), transformed into promastigotes, and grown <2 weeks prior to transfection. Stationary-phase parasites (5 x 106) were injected subcutaneously into the foot of BALB/c mice in triplicate, and development of lesions followed (7). General molecular methods were performed as described (1,4,5,8). Gene-specific hybridization probes were as follows: dhfr-ts, 0.8-kb Xho I fragment (nt 658-1483; ref. 8); neo (neomycin phosphotransferase), 0.9-kb Spe I fragment from pSpeNEOA (5); hyg (hygromycin B phosphotransferase), a PCR-derived cassette (1); probe P, 1.6-kb EcoRI/EcoRV fragment (8). DNA content was measured by flow cytometry using ethanol-fixed cells (9). He...