2019
DOI: 10.1007/124_2019_27
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Biosynthesis and Regulation of Secondary Cell Wall

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Cited by 6 publications
(9 citation statements)
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“…Consistent with the physiological observations, our transcriptome data also showed that the early hull development stages were the key period in determining the hull difference between rice-tartary buckwheat and normal tartary buckwheat. In A. thaliana and some other plants, many regulatory genes (major NAC and MYB TFs) and structural genes of SCW biosynthesis have been functional identified, and the gene regulation network of SCW biosynthesis has also been established [ 26 31 ]. In our study, we identified a module with genes showing specific high expression in “JQ” at 10 DAP by using WGCNA for all identified EDGs between “XMQ” and “JQ” hulls at four development stages.…”
Section: Discussionmentioning
confidence: 99%
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“…Consistent with the physiological observations, our transcriptome data also showed that the early hull development stages were the key period in determining the hull difference between rice-tartary buckwheat and normal tartary buckwheat. In A. thaliana and some other plants, many regulatory genes (major NAC and MYB TFs) and structural genes of SCW biosynthesis have been functional identified, and the gene regulation network of SCW biosynthesis has also been established [ 26 31 ]. In our study, we identified a module with genes showing specific high expression in “JQ” at 10 DAP by using WGCNA for all identified EDGs between “XMQ” and “JQ” hulls at four development stages.…”
Section: Discussionmentioning
confidence: 99%
“…In this module, 9 identified hub TFs were found to be the homologs of A. thaliana SCW biosynthesis regulation genes, which included the homologs of the first-layer ( NST1 , NST2 , and SND1 ) [ 32 34 ], the second-layer ( MYB46 / MYB83 ) [ 35 , 36 ] and the third-layer regulators ( MYB54 , MYB103 , C3H14 , and C3H15 ) [ 37 , 38 ]. Furthermore, 24 homologs of the A. thaliana SCW biosynthesis structural genes, which catalyzed cellulose, hemicellulose, pectin, and lignin biosynthesis, were also identified in this module [ 26 , 31 ], and 12 of them were also defined as hub genes. Based on the RNA-seq data, the expression of these identified SCW biosynthesis regulatory and structural genes were significantly higher (fold change > 2) in “JQ” than that in “XMQ” at 5 DAP or 10 DAP or both 5 DAP and 10 DAP, which was further verified by qRT-PCR.…”
Section: Discussionmentioning
confidence: 99%
“…Consistent with the physiological observations, our transcriptome data also showed that the early hull development stages were the key period in determining the hull difference between rice tartary buckwheat and normal tartary buckwheat. In A. thaliana and some other plants, many regulatory genes (major NAC and MYB TFs) and structural genes of SCW biosynthesis have been functional identi ed, and the gene regulation network of SCW biosynthesis has also been established [26][27][28][29][30][31]. In our study, we identi ed a module with genes showing speci c high expression in "JQ" at 10 DAP by using WGCNA for all identi ed EDGs between "XMQ" and "JQ" hulls at four development stages.…”
Section: Discussionmentioning
confidence: 99%
“…In this module, 9 identi ed hub TFs were found to be the homologs of A. thaliana SCW biosynthesis regulation genes, which include the homologs of the rst-layer (NST1, NST2, and SND1) [32][33][34], the second-layer (MYB46/MYB83) [35,36] and the third-layer regulators (MYB54, MYB103, C3H14, and C3H15) [37,38]. Furthermore, 24 homologs of the A. thaliana SCW biosynthesis structural genes, which catalyzed cellulose, hemicellulose, pectin, and lignin biosynthesis, were also identi ed in this module [26,31], and 12 of them were also de ned as hub genes. Based on the RNA-seq data, the expression of these identi ed SCW biosynthesis regulatory and structural genes were signi cantly higher (fold change > 2) in "JQ" than that in "XMQ" at 5 DAP or 10 DAP or both 5 DAP and 10 DAP, which was further veri ed by qRT-PCR.…”
Section: Discussionmentioning
confidence: 99%
See 1 more Smart Citation