The existence of auxotrophic mutants of Saccharomyces cerevisiae having an absolute requirement for the long-chain base (lcb) component of sphingolipids suggests that sphingolipids are crucial for viability and growth. One mutant, termed the lcbl-l mutant, lacks the activity of serine palmitoyltransferase, the first enzyme in the pathway for long-chain base synthesis. Here, we present evidence that LCBI has been molecularly cloned. The size of the LCBJ transcript, the direction of transcription, and transcription initiation sites were determined. In addition, the coding region and its 5' and 3' flanking regions were sequenced. Analysis of the DNA sequence revealed a single open reading frame of 1,674 nucleotides, encoding a predicted peptide of 558 amino acids. The hydropathy profile of the predicted peptide suggests a hydrophobic, globular, membrane-associated protein with two potential transmembrane helices. Comparison of the predicted amino acid sequence to known protein sequences revealed homology to 5-aminolevulinic acid synthase and to 2-amino-3-ketobutyrate coenzyme A ligase. These homologies, the similarity of the chemical reactions catalyzed by the three enzymes, and the finding that LCB1 restores serine palmitoyltransferase activity to an lcbl-defective strain indicate that serine palmitoyltransferase or a subunit of the enzyme is the most likely product of LCB1. Homology of the LCB1 predicted protein to the Escherichia coli biotin synthetase was also observed, but the biological significance of this observation is not clear. A role for sphingolipids in sporulation is implicated by our finding that diploids homozygous for kcbl failed to sporulate.Sphingolipids are membrane components found in animals (13), higher plants (18), and fungi (5); they are rarely present in procaryotes (20). In spite of much effort, it has been difficult to understand the exact biological role(s) of sphingolipids and their mode of action at the molecular level. In animals, sphingolipids are thought to play a role in such general cellular events as cell-to-cell recognition, regulation of cell growth, and differentiation (13,19). Sphingolipids have been shown to promote a variety of specific biological activities (for a review, see reference 15). For diseases such as cancer (14), there are changes in the cellular concentration and composition of sphingolipids, but the relationship of these changes to the disease state is unclear. Recently it has been suggested that long-chain bases, such as the sphingolipid precursor sphingosine, and the breakdown products of sphingolipids, lysosphingolipids, may have important biological functions (for a review, see reference 15).Saccharomyces cerevisiae contains a small and unique set of sphingolipids with the compositions inositol-p-ceramide, mannose-inositol-p-ceramide, and mannose-(inositol-p)2-ceramide (36, 39). These sphingolipids and those in other fungi and plants all contain the inositol phosphorylceramide moiety and phytosphingosine. Animal sphingolipids lack inositol phosphate and i...