Annually, agriculture is responsible for about 60% of tropical forest loss globally. Conservation strategies in agricultural landscapes range from enhancing farm-level habitat diversity to retaining forest cover within landscapes. A critical question is determining the relative influence of native trees within farms and forest cover around them on avian diversity, trait responses and species persistence in tree-based systems in landscapes where protected areas are often absent, often the case in lowland tropical forest ecosystems. By sampling birds across gradients of cashew plantation intensification and varying levels of surrounding cashew and forest cover, we examined the relative influence of site- and landscape-level factors on species composition, taxonomic, functional, and phylogenetic diversity, as well as species- and trait-specific responses, and whether phylogenetic relationships among bird species influenced these responses. At the community level, forests, cashew agroforests, and cashew monocultures hosted compositionally different bird communities. Site-level variables, specifically the proportion of native trees, influenced taxonomic and phylogenetic diversity, while landscape-level variables had no effect. None of the predictor variables accounted for the variation in functional diversity. At the species level, site-level variables, specifically the proportion of native trees, and landscape-level variables, particularly cashew cover around plantations, had positive and negative impacts on species responses, respectively. At the trait level, evergreen forest specialists were associated positively with the proportion of native trees and negatively associated with cashew cover. Resident species had a positive association with forest cover. We found a phylogenetic signal in species responses to predictor variables, indicating that closely-related species responded similarly to predictor variables. Synthesis and applications: To retain taxonomic and phylogenetic diversity and ensure persistence of evergreen forest specialists, it is essential to retain native trees within cashew plantations and maintain surrounding forest cover. Future policies should incentivise the retention and restoration of forest patches and restrict the felling of native trees within cashew plantations.