Purpose: A randomized controlled trial was conducted in patients initiating warfarin to determine whether algorithms that incorporate genotypes affecting warfarin metabolism and function, and Vitamin K metabolism improve prediction of therapeutic warfarin dose and anticoagulation management. Methods: A total of 230 patients were randomized to either a clinical arm where dosing algorithms considered only clinical information or an interventional arm where dosing algorithms used clinical and genotypic variables (CYP2C9, CYP4F2, and VKORC1). Subjects in the interventional arm were genotyped within 5 hours, and the initial dose was informed by genotype. Primary endpoints were absolute prediction error relative to therapeutic dose, and time in therapeutic target range during the first 14 days. Secondary endpoints included time to stable dose in therapeutic range, time to first international normalization ratio Ͼ4, and warfarin-related adverse events. Results: The model including genetics more accurately identified therapeutic dose twice as often as the clinical model (65.3% vs. 34.7%) (P Ͻ 0.0001). Patients in the interventional arm did not achieve greater time in therapeutic range. Study arms were similar regarding time to international normalization ratio Ͼ4 and adverse events. Conclusion: Genotype-informed dosing clearly improved prediction of therapeutic dose beyond that available with clinical parameters. Genetic information did not affect time in therapeutic target range during the first 14 days of therapy. Current management practices with the vagaries in dose adjustment after warfarin initiation exert a strong influence on traditional clinical outcomes. Genet Med 2011:13(6):509 -518.Key Words: anticoagulation, bleeding, CYP2C9, CYP4F2, INR, VKORC1, warfarin dosing U ntil very recently, warfarin has been the only US Food and Drug Administration-approved oral anticoagulant and is still the drug of choice for long-term anticoagulation. 1 However, warfarin ranks among the top 10 drugs causing serious adverse events and emergency room visits. 2 The safe use of warfarin is hampered by a narrow therapeutic index and substantial interindividual variation in dose requirements. Until an individual's therapeutic dose of warfarin is known, patients on warfarin therapy are at high risk for serious adverse health events, especially during drug initiation and when the international normalization ratio (INR) is above the therapeutic target range. 3 Interindividual variation in warfarin dose is mediated by multiple factors. 4 -6 Approximately 20% of the variability is explained by age, presence of comorbidities (e.g., diabetes, cancer, renal or liver disease, and concomitant use of some medications), and other personal characteristics (e.g., gender, smoking, and body size). 7 An additional 35% of dose variability is attributed to polymorphisms in CYP2C9, VKORC1, and CYP4F2 genes. 8 -10 For each of these genes, there is a clear biological pathway linking genetic variations to warfarin dose response. The CYP2C9 enzyme metabol...