Abstract:De novo genome assembly is a fundamental problem in computational molecular biology that aims to reconstruct an unknown genome sequence from a set of short DNA sequences (or reads) obtained from the genome. High throughput sequencers could generate several billions of such short reads in a single run. However, the relative ordering of the reads along the target genome is not known a priori. This lack of information is one of the main contributors to the increased complexity of the assembly process. Typically, … Show more
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