The brain-derived neurotrophic factor (BDNF) Valine 66 to Methionine human polymorphism results in impaired activity-dependent BDNF release and has been linked to psychiatric disorders including anxiety and alcohol dependence. We previously showed that knock-in mice carrying the mouse Methionine homolog (Met68BDNF) exhibit excessive and compulsive alcohol drinking behaviors as compared to the wild-type Val68BDNF mice. Here, we set out to determine the potential mechanism for the heightened and compulsive alcohol drinking phenotype exhibited by the Met68BDNFmice. We found that male, but not female Met68BDNF mice show social anxiety-like behaviors. We further report that male, but not female, Met68BDNF mice are resistant to the anxiolytic effects and sedative actions of alcohol as compared to Val68BDNF mice. Alcohol-dependent hypolocomotion is also reduced in Met68BDNF. In contrast, alcohol place preference is similar in Met68BDNF compared with Val68BDNF mice. Finally, we show that the anxiolytic action of alcohol is restored in Met68BDNF mice by overexpressing the wild-type Val68BDNF in the ventral hippocampus (vHC). Together, our results suggest that heighted social anxiety and a lack of alcohol-dependent anxiolysis may contribute to excessive alcohol intake by constraining normal BDNF signaling in the vHC.